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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs9693955 chr8:11790252 A/G SGK223 chr8:8175258-8244008:- -0.44 -8.2 2.19E-15 Box Plot
THCA rs9694940 chr8:11789858 G/C SGK223 chr8:8175258-8244008:- -0.46 -8.62 9.87E-17 Box Plot
THCA rs9694967 chr8:11790068 G/T SGK223 chr8:8175258-8244008:- -0.45 -8.45 3.6E-16 Box Plot
THCA rs9702057 chr10:45839940 C/A AGAP8 chr10:51224681-51371321:- 0.45 6.02 3.57E-9 Box Plot
THCA rs9702764 chr10:45839943 G/A AGAP8 chr10:51224681-51371321:- 0.45 6.04 3.05E-9 Box Plot
THCA rs9713426 chr3:90338187 C/T STX19 chr3:93733213-93747454:- 0.46 6.6 1.09E-10 Box Plot
THCA rs9713634 chr3:33640859 C/A C19orf56 chr19:12778881-12780465:- -0.24 -6.04 3.04E-9 Box Plot
THCA rs9714360 chr3:90357513 G/T STX19 chr3:93733213-93747454:- 0.44 6.36 4.73E-10 Box Plot
THCA rs9717195 chr5:46302781 A/G LOC647121 chr1:121260910-121313686:+ -0.37 -7.88 2.16E-14 Box Plot
THCA rs971891 chr5:129573666 C/T P4HA2 chr5:131527531-131631008:- 0.37 7.72 6.91E-14 Box Plot
THCA rs9728991 chr1:121264079 G/A NBPF14 chr1:148003642-148025863:- 0.34 7.53 2.61E-13 Box Plot
THCA rs973945 chr1:211201019 C/T CPNE6 chr14:24540046-24547309:+ 0.32 5.93 5.97E-9 Box Plot
THCA rs9753125 chr2:132190890 T/G CCDC74B chr2:130896860-130902707:- 0.37 6.66 7.44E-11 Box Plot
THCA rs9763350 chr5:45882593 T/C LOC647121 chr1:121260910-121313686:+ 0.37 7.88 2.2E-14 Box Plot
THCA rs9764211 chr5:45761754 T/C LOC647121 chr1:121260910-121313686:+ 0.35 7.58 1.79E-13 Box Plot